5BWN	Peptide Hydrolase	date	Jun 08, 2015
title	Crystal Structure Of Sirt3 With A H3k9 Peptide Containing A Lysine
authors	W.Gai, D.Liu
compound		source
Molecule: Myristoyl H3k9 Peptide Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Nad-Dependent Protein Deacetylase Sirtuin-3, Mito Chain: A Fragment: Unp Residues 118-399 Synonym: Hsirt3,Regulatory Protein Sir2 Homolog 3,Sir2-Like 3; Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sirt3, Sir2l3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.102 54.691 117.257 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.94 Å
ligand	MYK, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of SIRT3 reveal that the alpha2-alpha3 loop and alpha3-helix affect the interaction with long-chain acyl lysine., Gai W, Li H, Jiang H, Long Y, Liu D, FEBS Lett. 2016 Sep;590(17):3019-28. doi: 10.1002/1873-3468.12345. Epub 2016 Aug , 24. PMID:27501476

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (5bwn.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 5BWN CSU: Contacts of Structural Units for 5BWN Structure Factors (335 Kb) Retrieve 5BWN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BWN from S2C, [Save to disk] Re-refined 5bwn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BWN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BWN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bwn_A] [5bwn_B] [5bwn] SWISS-PROT database: Domain organization of by SWISSPFAM

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