5BYC Transferase date Jun 10, 2015
title Crystal Structure Of Human Ribokinase In C2 Spacegroup
authors J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop
compound source
Molecule: Ribokinase
Chain: A, B
Ec: 2.7.1.15
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbks, Rbsk
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.173 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.920 47.040 80.910 90.00 98.73 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand NA enzyme Transferase E.C.2.7.1.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (5byc.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 5BYC
  • CSU: Contacts of Structural Units for 5BYC
  • Structure Factors (916 Kb)
  • Retrieve 5BYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BYC from S2C, [Save to disk]
  • Re-refined 5byc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5byc] [5byc_B] [5byc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5BYC
  • Community annotation for 5BYC at PDBWiki (http://pdbwiki.org)

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