5C09 Immune System date Jun 12, 2015
title Hla Class I Histocompatibility Antigen
authors P.J.Rizkallah, A.M.Bulek, D.K.Cole, A.K.Sewell
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, F
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2, Hla-A02 Heavy Chain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B, G
Fragment: Unp Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Marker Peptide
Chain: C, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 1e6 Tcr Alpha Chain
Chain: D, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 1e6 Tcr Beta Chain
Chain: E, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.205 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.830 100.070 122.440 96.91 98.31 96.52
method X-Ray Diffractionresolution 2.48 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, I


G, B
  • cellular response to iron io...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (581 Kb) [Save to disk]
  • Biological Unit Coordinates (5c09.pdb1.gz) 289 Kb
  • Biological Unit Coordinates (5c09.pdb2.gz) 290 Kb
  • LPC: Ligand-Protein Contacts for 5C09
  • CSU: Contacts of Structural Units for 5C09
  • Structure Factors (3538 Kb)
  • Retrieve 5C09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C09 from S2C, [Save to disk]
  • Re-refined 5c09 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 5C09
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c09 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c09_C] [5c09_H] [5c09_F] [5c09_G] [5c09_I] [5c09_A] [5c09_B] [5c09_D] [5c09_J] [5c09] [5c09_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5C09: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 5C09
  • Community annotation for 5C09 at PDBWiki (http://pdbwiki.org)

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