5C0C Immune System date Jun 12, 2015
title 1e6 Tcr In Complex With Hla-A02 Carrying Rqfgpdwiva
authors P.J.Rizkallah, A.M.Bulek, D.K.Cole, A.K.Sewell
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, F
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2, Hla-A02 Heavy Chain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B, G
Fragment: Unp Residues 21-119
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Marker Peptide
Chain: C, H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 1e6 Tcr Alpha Chain
Chain: D, I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 1e6 Tcr Beta Chain
Chain: E, J
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.189 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.920 100.370 122.730 96.90 98.02 96.07
method X-Ray Diffractionresolution 1.97 Å
ligand EDO, GOL, PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, I


G, B
  • cellular response to iron io...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (583 Kb) [Save to disk]
  • Biological Unit Coordinates (5c0c.pdb1.gz) 290 Kb
  • Biological Unit Coordinates (5c0c.pdb2.gz) 289 Kb
  • LPC: Ligand-Protein Contacts for 5C0C
  • CSU: Contacts of Structural Units for 5C0C
  • Structure Factors (6783 Kb)
  • Retrieve 5C0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C0C from S2C, [Save to disk]
  • Re-refined 5c0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c0c_E] [5c0c_A] [5c0c_I] [5c0c_J] [5c0c_C] [5c0c_H] [5c0c] [5c0c_B] [5c0c_D] [5c0c_G] [5c0c_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5C0C: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 5C0C
  • Community annotation for 5C0C at PDBWiki (http://pdbwiki.org)

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