5C0V Rna Binding Protein date Jun 12, 2015
title Structure Of The Larp1-Unique Domain Dm15
authors R.M.Lahr, A.J.Berman
compound source
Molecule: La-Related Protein 1
Chain: A, B, C, D
Synonym: La Ribonucleoprotein Domain Family Member 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Larp1, Kiaa0731, Larp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.730 61.461 83.202 90.00 115.53 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE, SO4 enzyme
Primary referenceThe La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5'TOP sequence., Lahr RM, Mack SM, Heroux A, Blagden SP, Bousquet-Antonelli C, Deragon JM, Berman AJ, Nucleic Acids Res. 2015 Jul 22. pii: gkv748. PMID:26206669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (5c0v.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (5c0v.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (5c0v.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (5c0v.pdb4.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 5C0V
  • CSU: Contacts of Structural Units for 5C0V
  • Structure Factors (459 Kb)
  • Retrieve 5C0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C0V from S2C, [Save to disk]
  • Re-refined 5c0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c0v_D] [5c0v_B] [5c0v_C] [5c0v] [5c0v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C0V: [DM15 ] by SMART
    • Other resources with information on 5C0V
  • Community annotation for 5C0V at PDBWiki (http://pdbwiki.org)

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