5C2N Unknown Function date Jun 16, 2015
title The De Novo Evolutionary Emergence Of A Symmetrical Protein By Folding Constraints
authors R.G.Smock, I.Yadid, O.Dym, J.Clarke, D.S.Tawfik
compound source
Molecule: Beta Propeller
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Engineered: Yes
 Organism_scientific: Enterobacteria Phage L1
Organism_taxid: 268588
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 1 2
R_factor 0.186 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.219 112.219 107.290 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand NAG enzyme
Primary referenceDe Novo Evolutionary Emergence of a Symmetrical Protein Is Shaped by Folding Constraints., Smock RG, Yadid I, Dym O, Clarke J, Tawfik DS, Cell. 2016 Jan 28;164(3):476-86. doi: 10.1016/j.cell.2015.12.024. Epub 2016 Jan, 21. PMID:26806127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (5c2n.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (5c2n.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (5c2n.pdb3.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5C2N
  • CSU: Contacts of Structural Units for 5C2N
  • Structure Factors (1711 Kb)
  • Retrieve 5C2N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C2N from S2C, [Save to disk]
  • Re-refined 5c2n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C2N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C2N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c2n_O] [5c2n_I] [5c2n_K] [5c2n] [5c2n_G] [5c2n_N] [5c2n_F] [5c2n_M] [5c2n_L] [5c2n_J] [5c2n_B] [5c2n_C] [5c2n_H] [5c2n_D] [5c2n_E] [5c2n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5C2N
  • Community annotation for 5C2N at PDBWiki (http://pdbwiki.org)

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