5C4G	Transferase Signaling Protein	date	Jun 18, 2015
title	Crystal Structure Of An Engineered Construct Of Phosphatidyl Kinase III Beta With The Inhibitor Bqr695 In Complex With G Rab11
authors	J.E.Burke, M.L.Fowler
compound		source
Molecule: Ras-Related Protein Rab-11a Chain: B Synonym: Rab-11,Yl8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a, Rab11 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Poptg
Molecule: Phosphatidylinositol 4-Kinase Beta Chain: E Synonym: Ptdins 4-Kinase Beta,Npik,Pi4k92 Ec: 2.7.1.67 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pi4kb, Pik4cb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Popth
symmetry	Space Group: P 21 21 21	R_factor 0.254 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.820 105.400 188.850 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	BQR, GDP, MG, SO4	enzyme	Transferase E.C.2.7.1.67 BRENDA
Gene Ontology	Chain Function Process Component B E
Primary reference	Using hydrogen deuterium exchange mass spectrometry to engineer optimized constructs for crystallization of protein complexes: Case study of PI4KIIIbeta with Rab11., Fowler ML, McPhail JA, Jenkins ML, Masson GR, Rutaganira FU, Shokat KM, Williams RL, Burke JE, Protein Sci. 2016 Jan 12. doi: 10.1002/pro.2879. PMID:26756197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (5c4g.pdb1.gz) 201 Kb LPC: Ligand-Protein Contacts for 5C4G CSU: Contacts of Structural Units for 5C4G Structure Factors (1005 Kb) Retrieve 5C4G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C4G from S2C, [Save to disk] Re-refined 5c4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C4G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C4G

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c4g_B] [5c4g] [5c4g_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5C4G: [PI3Kc] [RAB ] by SMART

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