5C4U	Transcription Transcription Inhibitor	date	Jun 18, 2015
title	Identification Of A Novel Allosteric Binding Site For Rorgt
authors	G.Parthasarathy, S.Soisson
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A Fragment: Ligand-Binding Residues 267-507 Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.231 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.080 108.080 106.550 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.08 Å
ligand	4Y7, GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of an allosteric binding site for RORgammat inhibition., Scheepstra M, Leysen S, van Almen GC, Miller JR, Piesvaux J, Kutilek V, van Eenennaam H, Zhang H, Barr K, Nagpal S, Soisson SM, Kornienko M, Wiley K, Elsen N, Sharma S, Correll CC, Trotter BW, van der Stelt M, Oubrie A, Ottmann C, Parthasarathy G, Brunsveld L, Nat Commun. 2015 Dec 7;6:8833. doi: 10.1038/ncomms9833. PMID:26640126

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (5c4u.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 5C4U CSU: Contacts of Structural Units for 5C4U Structure Factors (553 Kb) Retrieve 5C4U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C4U from S2C, [Save to disk] Re-refined 5c4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C4U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C4U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c4u_A] [5c4u] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5C4U: [HOLI ] by SMART

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