5C5B Protein Transport date Jun 19, 2015
title Crystal Structure Of Human Appl Bar-Ph Heterodimer
authors Y.J.Chen, B.Chen
compound source
Molecule: Dcc-Interacting Protein 13-Alpha
Chain: A, C
Fragment: Bar-Ph Domain, Unp Residues 5-375
Synonym: Dip13-Alpha,Adapter Protein Containing Ph Domain,P And Leucine Zipper Motif 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Appl1, Appl, Dip13a, Kiaa1428
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a

Molecule: Dcc-Interacting Protein 13-Beta
Chain: B, D
Fragment: Unp Residues 1-375
Synonym: Dip13-Beta,Adapter Protein Containing Ph Domain,Pt And Leucine Zipper Motif 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Appl2, Dip13b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.924 88.542 147.388 90.00 92.65 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (5c5b.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (5c5b.pdb2.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 5C5B
  • CSU: Contacts of Structural Units for 5C5B
  • Structure Factors (762 Kb)
  • Retrieve 5C5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C5B from S2C, [Save to disk]
  • Re-refined 5c5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C5B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c5b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c5b_D] [5c5b_B] [5c5b_C] [5c5b_A] [5c5b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C5B: [PH ] by SMART
  • Other resources with information on 5C5B
  • Community annotation for 5C5B at PDBWiki (http://pdbwiki.org)

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