5C6W Immune System date Jun 23, 2015
title Anti-Cxcl13 Scfv - E10
authors C.Tu, J.Bard, L.Mosyak
compound source
Molecule: Protein Ighv1-69-2,Ig Lambda Chain V-II Region Ni
Chain: H, J
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hek 293
Gene: Ighv1-69-2
Expression_system: Mammalia
Expression_system_taxid: 40674
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.980 80.360 119.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand CL, EDO, PEG, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5c6w.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5C6W
  • CSU: Contacts of Structural Units for 5C6W
  • Structure Factors (2409 Kb)
  • Retrieve 5C6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C6W from S2C, [Save to disk]
  • Re-refined 5c6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C6W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c6w_J] [5c6w_H] [5c6w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C6W: [IGv ] by SMART
    • Other resources with information on 5C6W
  • Community annotation for 5C6W at PDBWiki (http://pdbwiki.org)

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