5C97 Hydrolase date Jun 26, 2015
title Insulin Regulated Aminopeptidase
authors A.Mpakali, E.Saridakis, K.Harlos, Y.Zhao, E.Stratikos
compound source
Molecule: Leucyl-Cystinyl Aminopeptidase
Chain: A, B
Synonym: Cystinyl Aminopeptidase,Insulin-Regulated Membrane Aminopeptidase,Insulin-Responsive Aminopeptidase,Irap,Oxyto Otase,Placental Leucine Aminopeptidase,P-Lap;
Ec: 3.4.11.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lnpep, Otase
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.000 260.151 73.360 90.00 111.61 90.00
method X-Ray Diffractionresolution 3.37 Å
ligand NAG, ZN enzyme Hydrolase E.C.3.4.11.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of Insulin-Regulated Aminopeptidase with Bound Substrate Analogue Provides Insight on Antigenic Epitope Precursor Recognition and Processing., Mpakali A, Saridakis E, Harlos K, Zhao Y, Papakyriakou A, Kokkala P, Georgiadis D, Stratikos E, J Immunol. 2015 Aug 10. pii: 1501103. PMID:26259583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (5c97.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (5c97.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5C97
  • CSU: Contacts of Structural Units for 5C97
  • Structure Factors (1863 Kb)
  • Retrieve 5C97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C97 from S2C, [Save to disk]
  • Re-refined 5c97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C97
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c97] [5c97_A] [5c97_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5C97
  • Community annotation for 5C97 at PDBWiki (http://pdbwiki.org)

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