5C9Z	Transferase Transferase Inhibitor	date	Jun 29, 2015
title	Crystal Structure Of Prmt5:Mep50 With Epz015866 And Sinefung
authors	P.A.Boriack-Sjodin
compound		source
Molecule: Protein Arginine N-Methyltransferase 5 Chain: A Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs; Ec: 2.1.1.-,2.1.1.125 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pdest
Molecule: Methylosome Protein 50 Chain: B Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pdest
symmetry	Space Group: I 2 2 2	R_factor 0.237 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.810 137.780 178.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.36 Å
ligand	4Z2, GOL, SFG	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A transcription corepressor ac... protein-arginine omega-N sym... B ligand-dependent nuclear rec...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (5c9z.pdb1.gz) 157 Kb LPC: Ligand-Protein Contacts for 5C9Z CSU: Contacts of Structural Units for 5C9Z Structure Factors (969 Kb) Retrieve 5C9Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C9Z from S2C, [Save to disk] Re-refined 5c9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C9Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C9Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c9z_A] [5c9z_B] [5c9z] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5C9Z: [WD40 ] by SMART

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