5C9Z Transferase Transferase Inhibitor date Jun 29, 2015
title Crystal Structure Of Prmt5:Mep50 With Epz015866 And Sinefung
authors P.A.Boriack-Sjodin
compound source
Molecule: Protein Arginine N-Methyltransferase 5
Chain: A
Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs;
Ec: 2.1.1.-,2.1.1.125
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdest

Molecule: Methylosome Protein 50
Chain: B
Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pdest
symmetry Space Group: I 2 2 2
R_factor 0.237 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.810 137.780 178.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.36 Å
ligand 4Z2, GOL, SFG enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...
  • protein-arginine omega-N sym...


  • B
  • ligand-dependent nuclear rec...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (5c9z.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 5C9Z
  • CSU: Contacts of Structural Units for 5C9Z
  • Structure Factors (969 Kb)
  • Retrieve 5C9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C9Z from S2C, [Save to disk]
  • Re-refined 5c9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C9Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c9z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c9z_A] [5c9z_B] [5c9z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C9Z: [WD40 ] by SMART
  • Other resources with information on 5C9Z
  • Community annotation for 5C9Z at PDBWiki (http://pdbwiki.org)

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