5CAL Transferase Transferase Inhibitor date Jun 29, 2015
title Egfr Kinase Domain Mutant "Tmlr" With Compound 24
authors C.Eigenbrot, C.Yu
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 2 3
R_factor 0.205 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.973 145.973 145.973 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 4Z8 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNoncovalent Mutant Selective Epidermal Growth Factor Receptor Inhibitors: A Lead Optimization Case Study., Heald R, Bowman KK, Bryan MC, Burdick D, Chan B, Chan E, Chen Y, Clausen S, Dominguez-Fernandez B, Eigenbrot C, Elliott R, Hanan EJ, Jackson P, Knight J, La H, Lainchbury M, Malek S, Mann S, Merchant M, Mortara K, Purkey H, Schaefer G, Schmidt S, Seward E, Sideris S, Shao L, Wang S, Yeap K, Yen I, Yu C, Heffron TP, J Med Chem. 2015 Nov 25;58(22):8877-95. doi: 10.1021/acs.jmedchem.5b01412. Epub, 2015 Nov 12. PMID:26455919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5cal.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 5CAL
  • CSU: Contacts of Structural Units for 5CAL
  • Structure Factors (355 Kb)
  • Retrieve 5CAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CAL from S2C, [Save to disk]
  • Re-refined 5cal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CAL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cal_A] [5cal]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CAL: [TyrKc ] by SMART
    • Other resources with information on 5CAL
  • Community annotation for 5CAL at PDBWiki (http://pdbwiki.org)

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