5CB4	Structural Protein	date	Jun 30, 2015
title	Crystal Structure Of T2r-Ttl-Tivantinib Complex
authors	Y.Wang, Y.Yu, Q.Chen, J.Yang
compound		source
Molecule: Tubulin Alpha Chain: A, C		Organism_scientific: Sus Barbatus Organism_taxid: 41807
Molecule: Tubulin Beta Chain: B, D		Organism_scientific: Sus Barbatus Organism_taxid: 41807
Molecule: Stathmin-4 Chain: E Fragment: Unp Residues 49-189 Synonym: Stathmin-Like Protein B3,Rb3 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Stmn4 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Uncharacterized Protein Chain: F Synonym: Tubulin Tyrosine Ligase, Ttl Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Ttl Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.060 158.444 181.825 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	ACP, CA, GDP, GOL, GTP, MES, MG, TIV	enzyme
Gene Ontology	Chain Function Process Component A, C structural constituent of cy... D, B structural constituent of cy... E F
Primary reference	Structures of a diverse set of colchicine binding site inhibitors in complex with tubulin provide a rationale for drug discovery., Wang Y, Zhang H, Gigant B, Yu Y, Wu Y, Chen X, Lai Q, Yang Z, Chen Q, Yang J, FEBS J. 2016 Jan;283(1):102-11. doi: 10.1111/febs.13555. Epub 2015 Nov 4. PMID:26462166

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (688 Kb) [Save to disk] Biological Unit Coordinates (5cb4.pdb1.gz) 679 Kb LPC: Ligand-Protein Contacts for 5CB4 CSU: Contacts of Structural Units for 5CB4 Structure Factors (2079 Kb) Retrieve 5CB4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CB4 from S2C, [Save to disk] Re-refined 5cb4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CB4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CB4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cb4_F] [5cb4] [5cb4_C] [5cb4_D] [5cb4_E] [5cb4_A] [5cb4_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CB4: [Tubulin] [Tubulin_C ] by SMART

Other resources with information on 5CB4

Community annotation for 5CB4 at PDBWiki (http://pdbwiki.org)

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