OCA Atlas for 5CBA

5CBA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, PEG

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, F	chemokine activity

Primary reference

A Combination of Structural and Empirical Analyses Delineates the Key Contacts Mediating Stability and Affinity Increases in an Optimized Biotherapeutic Single-chain Fv (scFv)., Tu C, Terraube V, Tam AS, Stochaj W, Fennell BJ, Lin L, Stahl M, LaVallie ER, Somers W, Finlay WJ, Mosyak L, Bard J, Cunningham O, J Biol Chem. 2016 Jan 15;291(3):1267-76. doi: 10.1074/jbc.M115.688010. Epub 2015 , Oct 29. PMID:26515064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]

Biological Unit Coordinates (5cba.pdb1.gz) 98 Kb

Biological Unit Coordinates (5cba.pdb2.gz) 99 Kb

LPC: Ligand-Protein Contacts for 5CBA

CSU: Contacts of Structural Units for 5CBA

Structure Factors (551 Kb)

Retrieve 5CBA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5CBA from S2C, [Save to disk]

Re-refined 5cba structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CBA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cba] [5cba_A] [5cba_B] [5cba_C] [5cba_D] [5cba_E] [5cba_F]

SWISS-PROT database:

Domains found in 5CBA: [IGv] [SCY ] by SMART

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