5CBE	Immune System	date	Jun 30, 2015
title	E10 In Complex With Cxcl13
authors	C.Tu, J.Bard, L.Mosyak
compound		source
Molecule: E10 Heavy Chain Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293 Gene: Ighv1-69-2 Expression_system: Mammalia Expression_system_taxid: 40674 Expression_system_cell_line: Hek293f
Molecule: E10 Light Chain Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Mammalia Expression_system_taxid: 40674 Expression_system_cell_line: Hek293f
Molecule: C-X-C Motif Chemokine 13 Chain: E, F Synonym: Angie,B Cell-Attracting Chemokine 1,Bca-1,B Lympho Chemoattractant,Cxc Chemokine Blc,Small-Inducible Cytokine Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cxcl13, Bca1, Blc, Scyb13 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.248 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.000 125.000 98.000 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	EDO	enzyme
Gene Ontology	Chain Function Process Component F, E chemokine activity
Primary reference	A Combination of Structural and Empirical Analyses Delineates the Key Contacts Mediating Stability and Affinity Increases in an Optimized Biotherapeutic Single-chain Fv (scFv)., Tu C, Terraube V, Tam AS, Stochaj W, Fennell BJ, Lin L, Stahl M, LaVallie ER, Somers W, Finlay WJ, Mosyak L, Bard J, Cunningham O, J Biol Chem. 2016 Jan 15;291(3):1267-76. doi: 10.1074/jbc.M115.688010. Epub 2015 , Oct 29. PMID:26515064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk] Biological Unit Coordinates (5cbe.pdb1.gz) 100 Kb Biological Unit Coordinates (5cbe.pdb2.gz) 101 Kb LPC: Ligand-Protein Contacts for 5CBE CSU: Contacts of Structural Units for 5CBE Structure Factors (857 Kb) Retrieve 5CBE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CBE from S2C, [Save to disk] Re-refined 5cbe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CBE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CBE

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cbe] [5cbe_A] [5cbe_E] [5cbe_D] [5cbe_C] [5cbe_B] [5cbe_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CBE: [IGv] [SCY ] by SMART

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