5CC0 Dna Binding Protein Dna date Jul 01, 2015
title Ancsr2 - Tslp Ngre Complex
authors W.H.Hudson, E.A.Ortlund
compound source
Molecule: Ancsr2 Dna Binding Domain
Chain: A, B
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpgpcpcptpcpcpgpgpgpapgpap 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Apgpcptpcptpcpcpcpgpgpapgp 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.334 72.507 104.942 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.41 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space., Hudson WH, Kossmann BR, de Vera IM, Chuo SW, Weikum ER, Eick GN, Thornton JW, Ivanov IN, Kojetin DJ, Ortlund EA, Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):326-31. doi:, 10.1073/pnas.1518960113. Epub 2015 Dec 29. PMID:26715749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5cc0.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 5CC0
  • CSU: Contacts of Structural Units for 5CC0
  • Structure Factors (150 Kb)
  • Retrieve 5CC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CC0 from S2C, [Save to disk]
  • Re-refined 5cc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cc0_D] [5cc0_B] [5cc0] [5cc0_C] [5cc0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CC0: [ZnF_C4 ] by SMART
  • Other resources with information on 5CC0
  • Community annotation for 5CC0 at PDBWiki (http://pdbwiki.org)

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