5CDB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 50B, K enzyme
Primary referenceSolution and Solid-State Analysis of Binding of 13-Substituted Berberine Analogues to Human Telomeric G-quadruplexes., Ferraroni M, Bazzicalupi C, Papi F, Fiorillo G, Guaman-Ortiz LM, Nocentini A, Scovassi AI, Lombardi P, Gratteri P, Chem Asian J. 2016 Apr 5;11(7):1107-15. doi: 10.1002/asia.201600116. Epub 2016, Mar 11. PMID:26865223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (5cdb.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 5CDB
  • CSU: Contacts of Structural Units for 5CDB
  • Structure Factors (127 Kb)
  • Retrieve 5CDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CDB from S2C, [Save to disk]
  • Re-refined 5cdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cdb] [5cdb_A] [5cdb_B]
  • SWISS-PROT database:

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