5CDI Chaperone date Jul 04, 2015
title Chloroplast Chaperonin 60b1 Of Chlamydomonas
authors S.Zhang, H.Zhou, F.Yu, F.Gao, J.He, C.Liu
compound source
Molecule: Chaperonin 60b1
Chain: A, N, B, C, D, E, F, G, H, I, J, K, L, M
Fragment: Unp Residues 31-580
Engineered: Yes
Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
Gene: Cpn60b1, Chlredraft_132530
Expression_system: Escherichia
Expression_system_taxid: 561
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.275 R_Free 0.325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.338 174.390 213.678 90.00 94.69 90.00
method X-Ray Diffractionresolution 3.81 Å
Gene CHLREDRAFT
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceStructural insight into the cooperation of chloroplast chaperonin subunits., Zhang S, Zhou H, Yu F, Bai C, Zhao Q, He J, Liu C, BMC Biol. 2016 Apr 12;14:29. doi: 10.1186/s12915-016-0251-8. PMID:27072913
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2402 Kb) [Save to disk]
  • Biological Unit Coordinates (5cdi.pdb1.gz) 2394 Kb
  • CSU: Contacts of Structural Units for 5CDI
  • Structure Factors (720 Kb)
  • Retrieve 5CDI in mmCIF format [Save to disk]
  • Re-refined 5cdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CDI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5cdi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cdi] [5cdi_A] [5cdi_G] [5cdi_D] [5cdi_H] [5cdi_M] [5cdi_L] [5cdi_K] [5cdi_C] [5cdi_I] [5cdi_B] [5cdi_J] [5cdi_E] [5cdi_F] [5cdi_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CDI
  • Community annotation for 5CDI at PDBWiki (http://pdbwiki.org)

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