5CDM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	54Q, DT, GOL, MN, NA, PTR, SO4	enzyme
Gene Ontology	Chain Function Process Component C, A D, B
Primary reference	Crystallization and initial crystallographic analysis of covalent DNA-cleavage complexes of Staphyloccocus aureus DNA gyrase with QPT-1, moxifloxacin and etoposide., Srikannathasan V, Wohlkonig A, Shillings A, Singh O, Chan PF, Huang J, Gwynn MN, Fosberry AP, Homes P, Hibbs M, Theobald AJ, Spitzfaden C, Bax BD, Acta Crystallogr F Struct Biol Commun. 2015 Oct 1;71(Pt 10):1242-6. doi:, 10.1107/S2053230X15015290. Epub 2015 Sep 23. PMID:26457513

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (695 Kb) [Save to disk] Biological Unit Coordinates (5cdm.pdb1.gz) 685 Kb LPC: Ligand-Protein Contacts for 5CDM CSU: Contacts of Structural Units for 5CDM Structure Factors (1244 Kb) Retrieve 5CDM in mmCIF format [Save to disk] Re-refined 5cdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CDM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cdm] [5cdm_A] [5cdm_B] [5cdm_C] [5cdm_D] [5cdm_E] [5cdm_F] [5cdm_I] [5cdm_N] SWISS-PROT database: Domains found in 5CDM: [TOP2c] [TOP4c ] by SMART

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