5CE1 Hydrolase Hydrolase Inhibitor date Jul 06, 2015
title Crystal Structure Of Serine Protease Hepsin In Complex With
authors K.N.Rao, R.C.Anita, R.Sangeetha, L.Anirudha, H.Subramnay
compound source
Molecule: Serine Protease Hepsin
Chain: A
Fragment: Unp Residues 46-417
Synonym: Transmembrane Protease Serine 1
Ec: 3.4.21.106
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hpn, Tmprss1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.583 47.678 60.784 90.00 105.30 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 50K enzyme Hydrolase E.C.3.4.21.106 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5ce1.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 5CE1
  • CSU: Contacts of Structural Units for 5CE1
  • Structure Factors (200 Kb)
  • Retrieve 5CE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CE1 from S2C, [Save to disk]
  • Re-refined 5ce1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CE1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ce1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ce1] [5ce1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CE1: [SR] [Tryp_SPc ] by SMART
  • Other resources with information on 5CE1
  • Community annotation for 5CE1 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science