5CEK Transferase date Jul 07, 2015
title Pseudokinase Domain Of Human Tribbles Homolog 1
authors P.D.Mace, Y.Nakatani
compound source
Molecule: Tribbles Homolog 1
Chain: A
Fragment: Unp Residues 83-343
Synonym: Trb-1,G-Protein-Coupled Receptor-Induced Gene 2 Pr 2,Skip1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trib1, C8fw, Gig2, Trb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 62 2 2
R_factor 0.207 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.693 152.693 62.798 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Mechanism of CCAAT-Enhancer Binding Protein Recruitment by the TRIB1 Pseudokinase., Murphy JM, Nakatani Y, Jamieson SA, Dai W, Lucet IS, Mace PD, Structure. 2015 Nov 3;23(11):2111-21. doi: 10.1016/j.str.2015.08.017. Epub 2015, Oct 9. PMID:26455797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5cek.pdb1.gz) 82 Kb
  • CSU: Contacts of Structural Units for 5CEK
  • Structure Factors (202 Kb)
  • Retrieve 5CEK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CEK from S2C, [Save to disk]
  • Re-refined 5cek structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CEK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CEK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cek_A] [5cek]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CEK: [STYKc ] by SMART
    • Other resources with information on 5CEK
  • Community annotation for 5CEK at PDBWiki (http://pdbwiki.org)

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