5CFA	Protein Binding Peptide	date	Jul 08, 2015
title	Crystal Structures Of Bbp From Staphylococcus Aureus With Pe Ligand
authors	Y.Yu, X.Y.Zhang, J.K.Gu
compound		source
Molecule: Bone Sialoprotein-Binding Protein Chain: A, B Fragment: Unp Residues 272-598 Synonym: Bsp-Binding Protein Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Bbp Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: Peptide From Fibrinogen Alpha Chain Chain: D, C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.178 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.916 74.961 75.563 90.00 102.91 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen alpha., Zhang X, Wu M, Zhuo W, Gu J, Zhang S, Ge J, Yang M, Protein Cell. 2015 Oct;6(10):757-66. doi: 10.1007/s13238-015-0205-x. Epub 2015, Sep 8. PMID:26349459

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (5cfa.pdb1.gz) 63 Kb Biological Unit Coordinates (5cfa.pdb2.gz) 63 Kb LPC: Ligand-Protein Contacts for 5CFA CSU: Contacts of Structural Units for 5CFA Structure Factors (1813 Kb) Retrieve 5CFA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CFA from S2C, [Save to disk] Re-refined 5cfa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CFA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CFA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cfa_A] [5cfa_B] [5cfa_D] [5cfa_C] [5cfa] SWISS-PROT database: Domain organization of by SWISSPFAM

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