5CFB Transport Protein date Jul 08, 2015
title Crystal Structure Of Human Glycine Receptor Alpha-3 Bound To Strychnine
authors P.L.Shaffer, X.Huang, H.Chen
compound source
Molecule: Glycine Receptor Subunit Alpha-3,Glycine Receptor Alpha-3;
Chain: A, B, C, D, E
Fragment: Unp Residues 34-460, With 343-418 Deleted
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glra3
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.260 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.242 143.198 180.054 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.04 Å
ligand NAG, SY9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCrystal structure of human glycine receptor-alpha3 bound to antagonist strychnine., Huang X, Chen H, Michelsen K, Schneider S, Shaffer PL, Nature. 2015 Oct 8;526(7572):277-80. doi: 10.1038/nature14972. Epub 2015 Sep 28. PMID:26416729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (574 Kb) [Save to disk]
  • Biological Unit Coordinates (5cfb.pdb1.gz) 564 Kb
  • LPC: Ligand-Protein Contacts for 5CFB
  • CSU: Contacts of Structural Units for 5CFB
  • Structure Factors (1870 Kb)
  • Retrieve 5CFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CFB from S2C, [Save to disk]
  • Re-refined 5cfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cfb_B] [5cfb_C] [5cfb_E] [5cfb_D] [5cfb_A] [5cfb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CFB
  • Community annotation for 5CFB at PDBWiki (http://pdbwiki.org)

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