5CGD	Signaling Protein	date	Jul 09, 2015
title	Structure Of The Human Class C Gpcr Metabotropic Glutamate R Transmembrane Domain In Complex With The Negative Allosteri Modulator 3-Chloro-5-[6-(5-Fluoropyridin-2-Yl)Pyrimidin-4- Yl]Benzonitrile - (Htl14242)
authors	J.A.Christopher, S.J.Aves, K.A.Bennett, A.S.Dore, J.C.Errey, A.Ja F.H.Marshall, K.Okrasa, M.J.Serrano-Vega, B.G.Tehan, G.R.Wiggin M.Congreve
compound		source
Molecule: Metabotropic Glutamate Receptor 5,Endolysin,Metab Glutamate Receptor 5; Chain: A Synonym: Mglur5,Lysis Protein,Lysozyme,Muramidase,Mglur5 Ec: 3.2.1.17 Engineered: Yes Mutation: Yes Other_details: Mglur5 Transmembrane Domain From Homo Sapien With T4-Lysozyme From Enterobacteria Phage T4 In Complex Wi Chemical Entity (Nce): 3-Chloro-5-[6-(5-Fluoropyridin-2-Yl) 4-Yl]Benzonitrile		Organism_scientific: Homo Sapiens, Enterobacteria Phage T4 Organism_common: Human Organism_taxid: 9606, 10665 Gene: Grm5, Gprc1e, Mglur5 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21
symmetry	Space Group: C 1 2 1	R_factor 0.242 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.574 43.727 81.862 90.00 98.97 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	51E, OLA	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Fragment and Structure-Based Drug Discovery for a Class C GPCR: Discovery of the mGlu5 negative allosteric modulator HTL14242 (3-chloro-5-[6-(5-fluoropyridin-2-yl)pyrimidin-4-yl]benzonitrile)., Christopher J, Aves SJ, Bennett KA, Dore AS, Errey JC, Jazayeri A, Marshall FH, Okrasa K, Serrano-Vega MJ, Tehan B, Wiggin GR, Congreve M, J Med Chem. 2015 Jul 30. PMID:26225459

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (5cgd.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 5CGD CSU: Contacts of Structural Units for 5CGD Structure Factors (161 Kb) Retrieve 5CGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CGD from S2C, [Save to disk] Re-refined 5cgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CGD in 3D

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Visual 3D analysis of 5CGD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cgd_A] [5cgd] SWISS-PROT database: Domain organization of by SWISSPFAM

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