5CHL Chaperone date Jul 10, 2015
title Structural Basis Of H2a.Z Recognition By Yl1 Histone Chapero Component Of Srcapswr1 Chromatin Remodeling Complex
authors S.Shan, X.Liang, L.Pan, C.Wu, Z.Zhou
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 72 Ho
Chain: A
Synonym: Protein Yl-1
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Yl-1, Cg4621
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(Ripl)

Molecule: Histone H2a.Z
Chain: B
Synonym: H2az
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2afz, H2az
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21(Ripl)
symmetry Space Group: P 41 21 2
R_factor 0.200 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.047 108.047 58.243 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of H2A.Z recognition by SRCAP chromatin-remodeling subunit YL1., Liang X, Shan S, Pan L, Zhao J, Ranjan A, Wang F, Zhang Z, Huang Y, Feng H, Wei D, Huang L, Liu X, Zhong Q, Lou J, Li G, Wu C, Zhou Z, Nat Struct Mol Biol. 2016 Apr;23(4):317-23. doi: 10.1038/nsmb.3190. Epub 2016 Mar, 14. PMID:26974124
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5chl.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 5CHL
  • Structure Factors (653 Kb)
  • Retrieve 5CHL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CHL from S2C, [Save to disk]
  • Re-refined 5chl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CHL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CHL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5chl_B] [5chl_A] [5chl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CHL: [H2A] [H2B ] by SMART
  • Other resources with information on 5CHL
  • Community annotation for 5CHL at PDBWiki (http://pdbwiki.org)

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