5CI8 Transcription Inhibitor date Jul 11, 2015
title Crystal Structure Of Human Tob In Complex With Inhibitor Fra
authors Y.Bai, S.Tashiro, S.Nagatoishi, T.Suzuki, K.Tsumoto, M.Bartlam, T.
compound source
Molecule: Protein Tob1
Chain: A
Synonym: Transducer Of Erbb-2 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tob1, Tob, Trob1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 61 2 2
R_factor 0.232 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.975 64.975 163.677 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.33 Å
ligand 53Y enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...


    • Primary referenceStructural basis for inhibition of the Tob-CNOT7 interaction by a fragment screening approach., Bai Y, Tashiro S, Nagatoishi S, Suzuki T, Yan D, Liu R, Tsumoto K, Bartlam M, Yamamoto T, Protein Cell. 2015 Dec;6(12):924-8. doi: 10.1007/s13238-015-0225-6. PMID:26518565
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5ci8.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5CI8
  • CSU: Contacts of Structural Units for 5CI8
  • Structure Factors (66 Kb)
  • Retrieve 5CI8 in mmCIF format [Save to disk]
  • Re-refined 5ci8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CI8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ci8] [5ci8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CI8: [btg1 ] by SMART
    • Other resources with information on 5CI8
  • Community annotation for 5CI8 at PDBWiki (http://pdbwiki.org)

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