5CJ8 Immune System date Jul 14, 2015
title Human Osteoclast Associated Receptor (Oscar) Extracellular D
authors G.F.Gao, J.Qi, Y.Shi, J.Haywood
compound source
Molecule: Osteoclast-Associated Immunoglobulin-Like Recepto
Chain: A
Fragment: Unp Residues 31-215
Synonym: Hoscar,Polymeric Immunoglobulin Receptor 3,Poly-Ig 3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oscar
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.215 46.464 66.980 90.00 93.25 90.00
method X-Ray Diffractionresolution 2.02 Å
Primary referenceStructural basis of collagen recognition by human osteoclast-associated receptor and design of osteoclastogenesis inhibitors., Haywood J, Qi J, Chen CC, Lu G, Liu Y, Yan J, Shi Y, Gao GF, Proc Natl Acad Sci U S A. 2016 Jan 7. pii: 201522572. PMID:26744311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5cj8.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 5CJ8
  • Structure Factors (167 Kb)
  • Retrieve 5CJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CJ8 from S2C, [Save to disk]
  • Re-refined 5cj8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CJ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CJ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cj8_A] [5cj8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CJ8: [IG] [IG_like ] by SMART
    • Other resources with information on 5CJ8
  • Community annotation for 5CJ8 at PDBWiki (http://pdbwiki.org)

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