5CJF Lyase date Jul 14, 2015
title The Crystal Structure Of The Human Carbonic Anhydrase Xiv In With A 1,1'-Biphenyl-4-Sulfonamide Inhibitor.
authors V.Alterio, G.De Simone
compound source
Molecule: Carbonic Anhydrase 14
Chain: A
Fragment: Residues 16-290
Synonym: Carbonate Dehydratase Xiv,Carbonic Anhydrase Xiv,C
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca14, Unq690pro1335
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 41 21 2
R_factor 0.197 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.495 88.495 108.736 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand 520, BMA, GOL, MAN, NAG, SO4, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 1,1'-Biphenyl-4-sulfonamides as a New Class of Potent and Selective Carbonic Anhydrase XIV Inhibitors., La Regina G, Coluccia A, Famiglini V, Pelliccia S, Monti L, Vullo D, Nuti E, Alterio V, De Simone G, Monti SM, Pan P, Parkkila S, Supuran CT, Rossello A, Silvestri R, J Med Chem. 2015 Nov 12;58(21):8564-72. doi: 10.1021/acs.jmedchem.5b01144. Epub, 2015 Nov 4. PMID:26497049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5cjf.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5CJF
  • CSU: Contacts of Structural Units for 5CJF
  • Structure Factors (589 Kb)
  • Retrieve 5CJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CJF from S2C, [Save to disk]
  • Re-refined 5cjf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CJF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cjf] [5cjf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CJF: [Carb_anhydrase ] by SMART
  • Other resources with information on 5CJF
  • Community annotation for 5CJF at PDBWiki (http://pdbwiki.org)

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