OCA Atlas for 5CJS

5CJS

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, K
J, C

Primary reference

A stable trimeric influenza hemagglutinin stem as a broadly protective immunogen., Impagliazzo A, Milder F, Kuipers H, Wagner M, Zhu X, Hoffman RM, van Meersbergen R, Huizingh J, Wanningen P, Verspuij J, de Man M, Ding Z, Apetri A, Kukrer B, Sneekes-Vriese E, Tomkiewicz D, Laursen NS, Lee PS, Zakrzewska A, Dekking L, Tolboom J, Tettero L, van Meerten S, Yu W, Koudstaal W, Goudsmit J, Ward AB, Meijberg W, Wilson IA, Radosevic K, Science. 2015 Aug 24. pii: aac7263. PMID:26303961

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]

Biological Unit Coordinates (5cjs.pdb1.gz) 88 Kb

Biological Unit Coordinates (5cjs.pdb2.gz) 89 Kb

LPC: Ligand-Protein Contacts for 5CJS

CSU: Contacts of Structural Units for 5CJS

Structure Factors (244 Kb)

Retrieve 5CJS in mmCIF format [Save to disk]

Re-refined 5cjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CJS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cjs_J] [5cjs] [5cjs_C] [5cjs_D] [5cjs_E] [5cjs_F] [5cjs_H] [5cjs_K] [5cjs_L]

SWISS-PROT database:

Domains found in 5CJS: [IG_like] [IGv ] by SMART

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