5CML Hydrolase date Jul 16, 2015
title Crystal Structure Of The Esterase Domain From Rhodothermus M Rmar_1206 Protein
authors J.Marles-Wright, C.Wardrope, M.B.V.Jensen, L.E.Horsfall, P.D.To S.J.Rosser
compound source
Molecule: Osmc Family Protein
Chain: A, B
Fragment: Unp Residues 1-255
Synonym: Esterase Rmar_1206
Engineered: Yes
Organism_scientific: Rhodothermus Marinus
Organism_taxid: 29549
Gene: Rmar_1206
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ai
Expression_system_plasmid: Pdest17
symmetry Space Group: P 1 21 1
R_factor 0.144 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.325 74.069 60.953 90.00 113.47 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand PGE enzyme
Gene RMAR
Primary referenceCharacterisation of a New Family of Carboxyl Esterases with an OsmC Domain., Jensen MV, Horsfall LE, Wardrope C, Togneri PD, Marles-Wright J, Rosser SJ, PLoS One. 2016 Nov 16;11(11):e0166128. doi: 10.1371/journal.pone.0166128., eCollection 2016. PMID:27851780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (5cml.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (5cml.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 5CML
  • CSU: Contacts of Structural Units for 5CML
  • Structure Factors (3830 Kb)
  • Retrieve 5CML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CML from S2C, [Save to disk]
  • Re-refined 5cml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CML
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cml_A] [5cml] [5cml_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CML
  • Community annotation for 5CML at PDBWiki (http://pdbwiki.org)

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