5CQQ Transcription Dna date Jul 22, 2015
title Crystal Structure Of The Drosophila Zeste Dna Binding Domain Complex With Dna
authors G.N.Gao, M.Wang, N.Yang, Y.Huang, R.M.Xu
compound source
Molecule: Regulatory Protein Zeste
Chain: A, B
Fragment: Unp Residues 51-130
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Z, Cg7803
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

Molecule: Dna (5'- D(Cptpgptptptptpcpcpapcptpcpgptptptptpt)
Chain: C, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227

Molecule: Dna (5'- D(Apapapapapcpgpapgptpgpgpapapapapcpapg)
Chain: D, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.007 59.705 202.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Primary referenceStructure of Zeste-DNA Complex Reveals a New Modality of DNA Recognition by Homeodomain-Like Proteins., Gao GN, Wang M, Yang N, Huang Y, Xu RM, J Mol Biol. 2015 Dec 4;427(24):3824-33. doi: 10.1016/j.jmb.2015.10.008. Epub 2015, Oct 21. PMID:26478222
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5cqq.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (5cqq.pdb2.gz) 29 Kb
  • CSU: Contacts of Structural Units for 5CQQ
  • Structure Factors (278 Kb)
  • Retrieve 5CQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CQQ from S2C, [Save to disk]
  • Re-refined 5cqq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CQQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cqq] [5cqq_B] [5cqq_D] [5cqq_A] [5cqq_E] [5cqq_F] [5cqq_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CQQ
  • Community annotation for 5CQQ at PDBWiki (http://pdbwiki.org)

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