5CRG Calcium Binding Protein date Jul 22, 2015
title Human Skeletal Calsequestrin, D210g Mutant High-Calcium Comp
authors K.M.Lewis, L.A.Ronish, C.Kang
compound source
Molecule: Calsequestrin-1
Chain: A, B, C, D
Fragment: Residues 35-396
Synonym: Calmitine,Calsequestrin,Skeletal Muscle Isoform
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casq1, Casq
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.179 67.462 158.062 90.00 96.48 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCharacterization of Two Human Skeletal Calsequestrin Mutants Implicated in Malignant Hyperthermia and Vacuolar Aggregate Myopathy., Lewis KM, Ronish LA, Rios E, Kang C, J Biol Chem. 2015 Nov 27;290(48):28665-74. doi: 10.1074/jbc.M115.686261. Epub, 2015 Sep 28. PMID:26416891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (5crg.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (5crg.pdb2.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 5CRG
  • CSU: Contacts of Structural Units for 5CRG
  • Structure Factors (890 Kb)
  • Retrieve 5CRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CRG from S2C, [Save to disk]
  • Re-refined 5crg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CRG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5crg] [5crg_D] [5crg_B] [5crg_C] [5crg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5CRG
  • Community annotation for 5CRG at PDBWiki (http://pdbwiki.org)

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