5CTR Immune System, Nuclear Protein, Rna Bind date Jul 24, 2015
title Crystal Structure Of Human Sart3 Hat-C Domain-Human Usp4 Dus Domain Complex
authors J.K.Park, E.E.Kim
compound source
Molecule: Squamous Cell Carcinoma Antigen Recognized By T-C
Chain: A, B
Fragment: Unp Residues 278-611
Synonym: Sart-3,Tat-Interacting Protein Of 110 Kda,Tip110,P Nuclear Rna-Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sart3, Kiaa0156, Tip110
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 4
Chain: C, D
Fragment: Unp Residues 1-230
Synonym: Deubiquitinating Enzyme 4,Ubiquitin Thioesterase 4 Ubiquitin-Specific-Processing Protease 4,Ubiquitous Nuclear Homolog;
Ec: 3.4.19.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp4, Unp, Unph
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.309 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.202 115.202 306.138 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.01 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (5ctr.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5ctr.pdb2.gz) 89 Kb
  • CSU: Contacts of Structural Units for 5CTR
  • Structure Factors (709 Kb)
  • Retrieve 5CTR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CTR from S2C, [Save to disk]
  • Re-refined 5ctr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CTR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CTR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ctr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ctr_D] [5ctr_C] [5ctr] [5ctr_B] [5ctr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CTR: [DUSP] [HAT ] by SMART
  • Other resources with information on 5CTR
  • Community annotation for 5CTR at PDBWiki (http://pdbwiki.org)

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