5CV0	Oxidoreductase	date	Jul 25, 2015
title	Crystal Structure Of N-Terminal Truncated Human B12-Chaperon (108-296)
authors	K.Yamada, C.Gherasim, R.Banerjee, M.Koutmos
compound		source
Molecule: Methylmalonic Aciduria And Homocystinuria Type D Mitochondrial; Chain: A, B Fragment: Unp Residues 108-296 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmadhc, C2orf25, Cl25022, Hspc161, My011 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b(+)
symmetry	Space Group: P 1 21 1	R_factor 0.186 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.638 67.111 66.219 90.00 110.54 90.00
method	X-Ray Diffraction	resolution	1.90 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of Human B12 trafficking protein CblD reveals molecular mimicry and identifies a new subfamily of Nitro-FMN reductases., Yamada K, Gherasim C, Banerjee R, Koutmos M, J Biol Chem. 2015 Sep 13. pii: jbc.M115.682435. PMID:26364851

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (5cv0.pdb1.gz) 104 Kb CSU: Contacts of Structural Units for 5CV0 Structure Factors (553 Kb) Retrieve 5CV0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CV0 from S2C, [Save to disk] Re-refined 5cv0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CV0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CV0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cv0_A] [5cv0] [5cv0_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5CV0

Community annotation for 5CV0 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---