5CVB	Structural Protein	date	Jul 25, 2015
title	Crystal Structure Of The Type Ix Collagen Nc2 Hetero-Trimeri Domain With A Guest Fragment A1a1a1 Of Type I Collagen
authors	S.P.Boudko, H.P.Bachinger
compound		source
Molecule: Collagen Alpha-1(I) Chain,Collagen Alpha-1(Ix) Ch Chain: A, D Fragment: Unp Residues 572-583,Unp Residues 754-789 Synonym: Alpha-1 Type I Collagen Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Col1a1, Col9a1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b(+)
Molecule: Collagen Alpha-1(I) Chain,Collagen Alpha-2(Ix) Ch Chain: B, E Fragment: Unp Residues 572-583,Unp Residues 517-552 Synonym: Alpha-1 Type I Collagen Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Col1a1, Col9a2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b(+)
Molecule: Collagen Alpha-1(I) Chain,Collagen Alpha-3(Ix) Ch Chain: C, F Fragment: Unp Residues 572-583,Unp Residues 517-553 Synonym: Alpha-1 Type I Collagen Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Col1a1, Col9a3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b(+)
symmetry	Space Group: P 1 21 1	R_factor 0.227 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.770 64.460 65.390 90.00 112.72 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	GOL, MSE	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (5cvb.pdb1.gz) 29 Kb Biological Unit Coordinates (5cvb.pdb2.gz) 30 Kb LPC: Ligand-Protein Contacts for 5CVB CSU: Contacts of Structural Units for 5CVB Structure Factors (247 Kb) Retrieve 5CVB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CVB from S2C, [Save to disk] Re-refined 5cvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CVB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CVB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cvb_D] [5cvb] [5cvb_A] [5cvb_E] [5cvb_B] [5cvb_F] [5cvb_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5CVB at PDBWiki (http://pdbwiki.org)

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