5CX3 Protein Binding date Jul 28, 2015
title Crystal Structure Of Fyco1 Lir In Complex With Lc3a
authors X.Cheng, L.Pan
compound source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain
Chain: A, B, C, D
Synonym: Autophagy-Related Protein Lc3 A,Autophagy-Related Like Modifier Lc3 A,Map1 Light Chain 3-Like Protein 1,Map1a Light Chain 3 A,Map1amap1b Lc3 A,Microtubule-Associated Pr Light Chain 3 Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map1lc3a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fyve And Coiled-Coil Domain-Containing Protein 1
Chain: E, F, G, H
Synonym: Zinc Finger Fyve Domain-Containing Protein 7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fyco1, Zfyve7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.426 115.257 73.517 90.00 102.29 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (5cx3.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (5cx3.pdb2.gz) 100 Kb
  • Biological Unit Coordinates (5cx3.pdb3.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 5CX3
  • CSU: Contacts of Structural Units for 5CX3
  • Structure Factors (575 Kb)
  • Retrieve 5CX3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CX3 from S2C, [Save to disk]
  • Re-refined 5cx3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CX3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CX3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5cx3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cx3_C] [5cx3_F] [5cx3_D] [5cx3_A] [5cx3_G] [5cx3_B] [5cx3_H] [5cx3] [5cx3_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CX3
  • Community annotation for 5CX3 at PDBWiki (http://pdbwiki.org)

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