5CYW Viral Protein date Jul 30, 2015
title Crystal Structure Of Vaccinia Virus C7
authors B.E.Krumm, X.Meng, Y.Li, Y.Xiang, J.Deng
compound source
Molecule: Interferon Antagonist C7
Chain: B
Synonym: C7l, Host Range Protein 2
Engineered: Yes
Organism_scientific: Vaccinia Virus (Strain Ankara)
Organism_common: Vacv
Organism_taxid: 126794
Strain: Ankara
Gene: Mva018l, Acam3000_mva_018, C7l
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 3
R_factor 0.153 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.653 100.653 100.653 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
Gene ACAM3000
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural basis for antagonizing a host restriction factor by C7 family of poxvirus host-range proteins., Meng X, Krumm B, Li Y, Deng J, Xiang Y, Proc Natl Acad Sci U S A. 2015 Nov 17. pii: 201515354. PMID:26578811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5cyw.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5cyw.pdb2.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5CYW
  • CSU: Contacts of Structural Units for 5CYW
  • Structure Factors (310 Kb)
  • Retrieve 5CYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CYW from S2C, [Save to disk]
  • Re-refined 5cyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cyw] [5cyw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CYW
  • Community annotation for 5CYW at PDBWiki (http://pdbwiki.org)

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