5CZX	Immune System	date	Aug 01, 2015
title	Crystal Structure Of Notch3 Nrr In Complex With 20358 Fab
authors	T.Hu, C.Fryer, R.Chopra, K.Clark
compound		source
Molecule: Neurogenic Locus Notch Homolog Protein 3 Chain: A, B Fragment: Negative Regulatory Region (Unp Residues 1378-164 Synonym: Notch 3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Notch3 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek
Molecule: 20358 Fab Heavy Chain Chain: C, H Synonym: Igg20358 Heavy Chain, Nvp-Lmw985 Heavy Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: 20358 Fab Light Chain Chain: D, L Synonym: Igg20358 Light Chain, Nvp-Lmw985 Light Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.340 123.860 150.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CA, CL, EDO, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Characterization of activating mutations of NOTCH3 in T-cell acute lymphoblastic leukemia and anti-leukemic activity of NOTCH3 inhibitory antibodies., Bernasconi-Elias P, Hu T, Jenkins D, Firestone B, Gans S, Kurth E, Capodieci P, Deplazes-Lauber J, Petropoulos K, Thiel P, Ponsel D, Hee Choi S, LeMotte P, London A, Goetcshkes M, Nolin E, Jones MD, Slocum K, Kluk MJ, Weinstock DM, Christodoulou A, Weinberg O, Jaehrling J, Ettenberg SA, Buckler A, Blacklow SC, Aster JC, Fryer CJ, Oncogene. 2016 May 9. doi: 10.1038/onc.2016.133. PMID:27157619

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk] Biological Unit Coordinates (5czx.pdb1.gz) 112 Kb Biological Unit Coordinates (5czx.pdb2.gz) 112 Kb LPC: Ligand-Protein Contacts for 5CZX CSU: Contacts of Structural Units for 5CZX Structure Factors (2378 Kb) Retrieve 5CZX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CZX from S2C, [Save to disk] Re-refined 5czx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CZX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CZX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5czx_H] [5czx_L] [5czx_A] [5czx_C] [5czx] [5czx_B] [5czx_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CZX: [IG_like] [IGv] [NL] [NOD] [NODP ] by SMART

Other resources with information on 5CZX

Community annotation for 5CZX at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---