5D0M date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceSecondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity., Wright JD, Mace PD, Day CL, Nat Struct Mol Biol. 2015 Dec 14. doi: 10.1038/nsmb.3142. PMID:26656854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5d0m.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5D0M
  • CSU: Contacts of Structural Units for 5D0M
  • Structure Factors (1444 Kb)
  • Retrieve 5D0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D0M from S2C, [Save to disk]
  • Re-refined 5d0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d0m] [5d0m_A] [5d0m_B] [5d0m_C]
  • SWISS-PROT database:
  • Domains found in 5D0M: [RING] [UBCc] [UBQ ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science