5D2I date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, CA, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid., Guimaraes SL, Coitinho JB, Costa DM, Araujo SS, Whitman CP, Nagem RA, Biochemistry. 2016 Apr 27. PMID:27082660
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (5d2i.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5d2i.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 5D2I
  • CSU: Contacts of Structural Units for 5D2I
  • Structure Factors (880 Kb)
  • Retrieve 5D2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D2I from S2C, [Save to disk]
  • Re-refined 5d2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d2i] [5d2i_A] [5d2i_B]
  • SWISS-PROT database:

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