OCA Atlas for 5D39

5D39

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PTR

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A, D, C

Primary reference

Structural basis for DNA recognition by STAT6., Li J, Rodriguez JP, Niu F, Pu M, Wang J, Hung LW, Shao Q, Zhu Y, Ding W, Liu Y, Da Y, Yao Z, Yang J, Zhao Y, Wei GH, Cheng G, Liu ZJ, Ouyang S, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13015-13020. Epub 2016 Nov 1. PMID:27803324

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (355 Kb) [Save to disk]

Biological Unit Coordinates (5d39.pdb1.gz) 347 Kb

Biological Unit Coordinates (5d39.pdb2.gz) 177 Kb

Biological Unit Coordinates (5d39.pdb3.gz) 176 Kb

LPC: Ligand-Protein Contacts for 5D39

CSU: Contacts of Structural Units for 5D39

Structure Factors (797 Kb)

Retrieve 5D39 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D39 from S2C, [Save to disk]

Re-refined 5d39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D39 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d39] [5d39_A] [5d39_B] [5d39_C] [5d39_D] [5d39_E] [5d39_F] [5d39_M] [5d39_N]

SWISS-PROT database:

Domain found in 5D39: [SH2 ] by SMART

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