5D39	Transcription Dna	date	Aug 06, 2015
title	Transcription Factor-Dna Complex
authors	J.Li, F.Niu, S.Ouyang, Z.Liu
compound		source
Molecule: Signal Transducer And Activator Of Transcription Chain: A, B, C, D Fragment: Unp Residues 123-658 Synonym: Il-4 Stat Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Stat6 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pmcsg7
Molecule: Dna (5'- D(Ptpcptpgptpcptptpcpcpapgpgpapapaptpcpc 3'); Chain: N, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'- D(Paptpgpgpaptptptpcpcptpgpgpapapgpapcpa 3'); Chain: M, E Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.210 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.395 94.697 145.642 79.62 78.31 89.58
method	X-Ray Diffraction	resolution	3.20 Å
ligand	PTR	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for DNA recognition by STAT6., Li J, Rodriguez JP, Niu F, Pu M, Wang J, Hung LW, Shao Q, Zhu Y, Ding W, Liu Y, Da Y, Yao Z, Yang J, Zhao Y, Wei GH, Cheng G, Liu ZJ, Ouyang S, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13015-13020. Epub 2016 Nov 1. PMID:27803324

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (355 Kb) [Save to disk] Biological Unit Coordinates (5d39.pdb1.gz) 347 Kb Biological Unit Coordinates (5d39.pdb2.gz) 177 Kb Biological Unit Coordinates (5d39.pdb3.gz) 176 Kb LPC: Ligand-Protein Contacts for 5D39 CSU: Contacts of Structural Units for 5D39 Structure Factors (826 Kb) Retrieve 5D39 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D39 from S2C, [Save to disk] Re-refined 5d39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D39 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D39

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d39_A] [5d39_M] [5d39_C] [5d39_F] [5d39] [5d39_N] [5d39_B] [5d39_D] [5d39_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5D39: [SH2 ] by SMART

Other resources with information on 5D39

Community annotation for 5D39 at PDBWiki (http://pdbwiki.org)

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