5D3G	Transferase	date	Aug 06, 2015
title	Structure Of Hiv-1 Reverse Transcriptase Bound To A Novel 38 Hairpin Template-Primer Dna Aptamer
authors	M.T.Miller, S.Tuske, K.Das, E.Arnold
compound		source
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit Chain: A, C Synonym: Pr160gag-Pol Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10); Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Isolate Bh10 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hiv-1 Reverse Transcriptase P51 Subunit Chain: B, D Synonym: Pr160gag-Pol Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10); Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Isolate Bh10 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Aptamer (38-Mer) Chain: F, E Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.191 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.015 128.907 132.615 90.00 101.34 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	FRU, GLC, GOL, OMC, SO4	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structure of HIV-1 reverse transcriptase bound to a novel 38-mer hairpin template-primer DNA aptamer., Miller MT, Tuske S, Das K, Destefano JJ, Arnold E, Protein Sci. 2015 Aug 21. doi: 10.1002/pro.2776. PMID:26296781

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (741 Kb) [Save to disk] Biological Unit Coordinates (5d3g.pdb1.gz) 367 Kb Biological Unit Coordinates (5d3g.pdb2.gz) 367 Kb LPC: Ligand-Protein Contacts for 5D3G CSU: Contacts of Structural Units for 5D3G Structure Factors (932 Kb) Retrieve 5D3G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D3G from S2C, [Save to disk] Re-refined 5d3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d3g_F] [5d3g_C] [5d3g_A] [5d3g_D] [5d3g_B] [5d3g_E] [5d3g] SWISS-PROT database: Domain organization of by SWISSPFAM

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