5D5P date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceTowards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase., Bai L, Fujishiro T, Huang G, Koch J, Takabayashi A, Yokono M, Tanaka A, Xu T, Hu X, Ermler U, Shima S, Faraday Discuss. 2017 Mar 15. doi: 10.1039/c6fd00209a. PMID:28294213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5p.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (5d5p.pdb2.gz) 100 Kb
  • CSU: Contacts of Structural Units for 5D5P
  • Structure Factors (1194 Kb)
  • Retrieve 5D5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5P from S2C, [Save to disk]
  • Re-refined 5d5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5p] [5d5p_A] [5d5p_B] [5d5p_C] [5d5p_D]
  • SWISS-PROT database:

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