5D5V	Transcription Dna	date	Aug 11, 2015
title	Crystal Structure Of Human Hsf1 With Satellite III Repeat Dn
authors	T.Neudegger, J.Verghese, M.Hayer-Hartl, F.U.Hartl, A.Bracher
compound		source
Molecule: Heat Shock Factor Protein 1 Chain: B, D Fragment: Dna Binding Domain, Unp Residues 1-120 Synonym: Hsf 1,Heat Shock Transcription Factor 1,Hstf 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hsf1, Hstf1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex-Htb
Molecule: Dna Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Dna Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.190 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.813 112.678 39.865 90.00 92.56 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component D, B
Primary reference	Structure of human heat-shock transcription factor 1 in complex with DNA., Neudegger T, Verghese J, Hayer-Hartl M, Hartl FU, Bracher A, Nat Struct Mol Biol. 2016 Jan 4. doi: 10.1038/nsmb.3149. PMID:26727489

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (5d5v.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 5D5V CSU: Contacts of Structural Units for 5D5V Structure Factors (278 Kb) Retrieve 5D5V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D5V from S2C, [Save to disk] Re-refined 5d5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D5V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D5V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d5v_B] [5d5v_C] [5d5v_A] [5d5v_D] [5d5v] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5D5V: [HSF ] by SMART

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