5D7A	Transferase Transferase Inhibitor	date	Aug 13, 2015
title	Crystal Structure Of The Kinase Domain Of Traf2 And Nck-Inte Protein Kinase With Ncb-0846
authors	N.Ohbayashi, M.Kukimoto-Niino, T.Yamada, M.Shirouzu
compound		source
Molecule: Traf2 And Nck-Interacting Protein Kinase Chain: A, B, C Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnik, Kiaa0551 Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590
symmetry	Space Group: C 1 2 1	R_factor 0.184 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 212.620 124.972 49.897 90.00 96.32 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	58C, SO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	TNIK inhibition abrogates colorectal cancer stemness., Masuda M, Uno Y, Ohbayashi N, Ohata H, Mimata A, Kukimoto-Niino M, Moriyama H, Kashimoto S, Inoue T, Goto N, Okamoto K, Shirouzu M, Sawa M, Yamada T, Nat Commun. 2016 Aug 26;7:12586. doi: 10.1038/ncomms12586. PMID:27562646

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (5d7a.pdb1.gz) 49 Kb Biological Unit Coordinates (5d7a.pdb2.gz) 48 Kb Biological Unit Coordinates (5d7a.pdb3.gz) 49 Kb LPC: Ligand-Protein Contacts for 5D7A CSU: Contacts of Structural Units for 5D7A Structure Factors (590 Kb) Retrieve 5D7A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D7A from S2C, [Save to disk] Re-refined 5d7a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D7A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7a] [5d7a_C] [5d7a_A] [5d7a_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5D7A: [S_TKc ] by SMART

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