5D7D		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	57X, CL, MG, MPD	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Discovery of Indazole Derivatives as a Novel Class of Bacterial Gyrase B Inhibitors., Zhang J, Yang Q, Romero JA, Cross J, Wang B, Poutsiaka KM, Epie F, Bevan D, Wu Y, Moy T, Daniel A, Chamberlain B, Carter N, Shotwell J, Arya A, Kumar V, Silverman J, Nguyen K, Metcalf CA 3rd, Ryan D, Lippa B, Dolle RE, ACS Med Chem Lett. 2015 Sep 8;6(10):1080-5. doi: 10.1021/acsmedchemlett.5b00266. , eCollection 2015 Oct 8. PMID:26487916

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (5d7d.pdb1.gz) 73 Kb Biological Unit Coordinates (5d7d.pdb2.gz) 72 Kb LPC: Ligand-Protein Contacts for 5D7D CSU: Contacts of Structural Units for 5D7D Structure Factors (515 Kb) Retrieve 5D7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D7D from S2C, [Save to disk] Re-refined 5d7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7d] [5d7d_A] [5d7d_B] SWISS-PROT database: Domains found in 5D7D: [HATPase_c] [TOP2c ] by SMART

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