OCA Atlas for 5D7G

5D7G

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
C, E, A, G

Primary reference

Mutation in reduces autophagy and leads to ataxia with developmental delay., Kim M, Sandford E, Gatica D, Qiu Y, Liu X, Zheng Y, Schulman BA, Xu J, Semple I, Ro SH, Kim B, Mavioglu RN, Tolun A, Jipa A, Takats S, Karpati M, Li JZ, Yapici Z, Juhasz G, Lee JH, Klionsky DJ, Burmeister M, Elife. 2016 Jan 26;5. pii: e12245. doi: 10.7554/eLife.12245. PMID:26812546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]

Biological Unit Coordinates (5d7g.pdb1.gz) 96 Kb

Biological Unit Coordinates (5d7g.pdb2.gz) 95 Kb

CSU: Contacts of Structural Units for 5D7G

Structure Factors (709 Kb)

Retrieve 5D7G in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D7G from S2C, [Save to disk]

Re-refined 5d7g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D7G in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d7g] [5d7g_A] [5d7g_B] [5d7g_C] [5d7g_D] [5d7g_E] [5d7g_F] [5d7g_G] [5d7g_H]

SWISS-PROT database:

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