5DA1 Hydrolase date Aug 19, 2015
title A Dimerization-Dependent Mechanism Drives Prrsv Nsp11 Functi Beta Interferon Antagonist And Endoribonuclease
authors Y.Shi, G.Peng
compound source
Molecule: Endoribonuclease
Chain: A, B
Fragment: Nsp11, Unp Residues 1085-1307
Engineered: Yes
 Organism_scientific: Porcine Reproductive And Respiratory S Virus;
Organism_common: Prrsv
Organism_taxid: 28344
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.211 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.317 77.317 204.693 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (5da1.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 5DA1
  • Structure Factors (247 Kb)
  • Retrieve 5DA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DA1 from S2C, [Save to disk]
  • Re-refined 5da1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DA1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c5da1, region A:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1a5da1, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1e5da1, region A:251-402 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5da1_A] [5da1] [5da1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DA1
  • Community annotation for 5DA1 at PDBWiki (http://pdbwiki.org)

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