5DB6		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FMG, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	N7 Methylation Alters Hydrogen-Bonding Patterns of Guanine in Duplex DNA., Kou Y, Koag MC, Lee S, J Am Chem Soc. 2015 Nov 11;137(44):14067-70. doi: 10.1021/jacs.5b10172. Epub 2015, Nov 2. PMID:26517568

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (5db6.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 5DB6 CSU: Contacts of Structural Units for 5DB6 Structure Factors (94 Kb) Retrieve 5DB6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DB6 from S2C, [Save to disk] Re-refined 5db6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DB6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5db6] [5db6_A] [5db6_D] [5db6_P] [5db6_T] SWISS-PROT database: Domains found in 5DB6: [HhH1] [POLXc ] by SMART

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